RJE Genecards Parsing Module
Copyright © 2007 Richard J. Edwards - See source code for GNU License Notice
See SLiMSuite Blog for further documentation. See
This module has now been superceded somewhat by the rje_genemap module but is still used with rje_hprd to compile
This is a prototype module, which aims to take in a list of Gene Symbols and/or Aliases, find the relevant GeneCard entry, download it and extract the relevant protein gene/protein links into a table.
The ultimate goal is to generate a table pulling in identifiers from EnsEMBL, GeneCards and HPRD to allow easy
cross-referencing across datasets and compilation of data from different sources. When using the
To save time, a full download of HGNC symbols can be downloaded from HGNC (http://www.genenames.org/index.html)
and imported using the
### Input Options ###
History Module Version History
# 0.0 - Initial Compilation. # 0.1 - Added EnsLoci processing. # 0.2 - Added altsource and generally improved function and commenting. # 0.3 - Added more interactivity and options. # 0.4 - Added reading of HGNC download.
© 2015 RJ Edwards. Contact: email@example.com.