|
SLiMSuite REST Server |
| Links |
|---|
| REST Home |
| EdwardsLab Homepage |
| EdwardsLab Blog |
| SLiMSuite Blog |
| SLiMSuite |
| Webservers |
| Genomes |
| REST Pages |
| REST Status |
| REST Help |
| REST Tools |
| REST Alias Data |
| REST API |
| REST News |
| REST Sitemap |
SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: outfile
Option Type: [?]{docs:?} FILE X
Modules: rje_paml rje_teaching file_monster rje_glossary rje_pattern_discovery rje_scansite rje_seqgen rje_seqplot slim_pickings wormpump rje_obj rje presto_V5
| Module | Option | Description | Default |
|---|---|---|---|
| file_monster | [outfile=?]{docs:?} |
? |
|
| presto_V5 | outfile=X |
Base name of results files, e.g. X.presto.tdt. | motifsFILE-searchdbFILE.presto.tdt |
| rje | [outfile=?]{docs:?} |
? |
|
| rje_glossary | outfile=FILE |
Output file name (input.html by default) | |
| rje_obj | [outfile=?]{docs:?} |
? |
|
| rje_paml | outfile=FILE |
Name of PAML output file | 'mlc' |
| rje_pattern_discovery | outfile=FILE |
Output file name | seqin.teiresias.* |
| rje_scansite | outfile=FILE |
Output file name | scansite.tdt |
| rje_seqgen | outfile=FILE |
Output delimited file of scrambled peptides or peptide and scrambled sequence. | scramble.tdt |
| rje_seqplot | outfile=X |
Leader for output files | None |
| rje_teaching | [outfile=?]{docs:?} |
? |
|
| slim_pickings | outfile=FILE |
Name of output file. | slimdisc_results.csv |
| wormpump | outfile=FILE |
Name of output file | wormpump.tdt |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.