SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: outfile

Option Type: [?]{docs:?} FILE X

Modules: rje_paml rje_teaching file_monster rje_glossary rje_pattern_discovery rje_scansite rje_seqgen rje_seqplot slim_pickings wormpump rje_obj rje presto_V5


ModuleOptionDescriptionDefault
file_monster [outfile=?]{docs:?} ?
presto_V5 outfile=X Base name of results files, e.g. X.presto.tdt. motifsFILE-searchdbFILE.presto.tdt
rje [outfile=?]{docs:?} ?
rje_glossary outfile=FILE Output file name (input.html by default)
rje_obj [outfile=?]{docs:?} ?
rje_paml outfile=FILE Name of PAML output file 'mlc'
rje_pattern_discovery outfile=FILE Output file name seqin.teiresias.*
rje_scansite outfile=FILE Output file name scansite.tdt
rje_seqgen outfile=FILE Output delimited file of scrambled peptides or peptide and scrambled sequence. scramble.tdt
rje_seqplot outfile=X Leader for output files None
rje_teaching [outfile=?]{docs:?} ?
slim_pickings outfile=FILE Name of output file. slimdisc_results.csv
wormpump outfile=FILE Name of output file wormpump.tdt

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.